PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016455528.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 257aa    MW: 29144.3 Da    PI: 8.7596
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016455528.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002394116123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C k F ++  L  H++ H
  XP_016455528.1  94 FECQYCFKQFANSQALGGHQNAH 116
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.9E-692121No hitNo description
Gene3DG3DSA:3.30.160.601.0E-492120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.42794121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MTKDVSSTFH SPSFNNGENY ESSSKSCVEN KRLKLFGFEL EPSPKIQKNS KEDQGDHESV  60
NSSSASTVSS GRDQEKLLPA SNSKPDHEEI MKKFECQYCF KQFANSQALG GHQNAHKKER  120
MRKKRLQLQA RKASLSCYLQ PFQNSNNNIN YQFYDPNSFF GNSDQFTVYD ESQISFSPYD  180
QDSQVSAGKW PFQQDSQVLA GKWPFQQDSC MFTLTHGEKS REKYSRPAAV MKPSALPNSA  240
SKKKCNSLDL QLGLSLH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789685.10.0PREDICTED: zinc finger protein 5-like
RefseqXP_016455528.10.0PREDICTED: zinc finger protein 5-like
TrEMBLK4BWF85e-69K4BWF8_SOLLC; Uncharacterized protein
STRINGSolyc05g006310.1.12e-68(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51362130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.13e-17zinc finger protein 5